Published June 11, 2026
| Version v0.1.2
Software
Open
github.com/iwc-workflows/histological-staining-area-quantification/histological-staining-area-quantification
Description
This workflow performs colour deconvolution and automated thresholding to quantify stained area in brightfield histological images (MT, IHC). It accepts whole slides or pre-cropped ROIs.
Files
github.com-iwc-workflows-histological-staining-area-quantification-histological-staining-area-quantification_v0.1.2.zip
Files
(11.7 kB)
| Name | Size | Download all |
|---|---|---|
|
md5:3e97e15e20f12b7da9309ad5dade7a3d
|
11.7 kB | Preview Download |
Additional details
Related works
- Is identical to
- https://dockstore.org/aliases/workflow-versions/10.5281-zenodo.20641972 (URL)
- https://dockstore.org/workflows/github.com/iwc-workflows/histological-staining-area-quantification/histological-staining-area-quantification:v0.1.2 (URL)
- https://dockstore.org/api/ga4gh/trs/v2/tools/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhistological-staining-area-quantification%2Fhistological-staining-area-quantification/versions/v0.1.2/PLAIN-gxformat2/descriptor/histological-staining-area-quantification.ga (URL)